fix: upgrade deno_ast related crates (#23187)

Had to revert back swc due to
https://github.com/swc-project/swc/issues/8840

Fixes:

- https://github.com/denoland/deno_lint/pull/1262
- https://github.com/denoland/deno_doc/pull/538
- https://github.com/denoland/deno_doc/pull/537
- https://github.com/denoland/deno_graph/pull/430
- https://github.com/denoland/deno_graph/pull/425
- https://github.com/denoland/deno_graph/pull/432

cli/tools/bundle.rs

@@ -144,15 +144,18 @@ fn bundle_module_graph(
     }
   }
 
+  let (transpile_options, emit_options) =
+    crate::args::ts_config_to_transpile_and_emit_options(
+      ts_config_result.ts_config,
+    );
   deno_emit::bundle_graph(
     graph,
     deno_emit::BundleOptions {
       minify: false,
       bundle_type: deno_emit::BundleType::Module,
-      emit_options: crate::args::ts_config_to_emit_options(
-        ts_config_result.ts_config,
-      ),
+      emit_options,
       emit_ignore_directives: true,
+      transpile_options,
     },
   )
 }