Make ecosystem all check more generic (#4629)

* Don't assume unique repo names in ecosystem checks

This fixes a bug where previously repositories with the same name would have been overwritten.

I tested with `scripts/check_ecosystem.py -v --checkouts target/checkouts_main .venv/bin/ruff target/release/ruff` and ruff 0.0.267 that changes are shown. I confirmed with `scripts/ecosystem_all_check.sh check --select RUF008` (next PR) that the checkouts are now complete.

* Make ecosystem all check more generic

This allows passing arguments to the ecosystem all check script, e.g. you can now do `scripts/ecosystem_all_check.sh check --select RUF008`.

Tested with
```
$ cat target/ecosystem_all_results/*.stdout.txt | head
src/fi_parliament_tools/parsing/data_structures.py:33:17: RUF008 Do not use mutable default values for dataclass attributes
src/fi_parliament_tools/parsing/data_structures.py:76:17: RUF008 Do not use mutable default values for dataclass attributes
src/fi_parliament_tools/parsing/data_structures.py:178:17: RUF008 Do not use mutable default values for dataclass attributes
Found 3 errors.
braid_triggers/tasks.py:46:17: RUF008 Do not use mutable default values for dataclass attributes
Found 1 error.
src/boards/RaspberryPi3.py:15:22: RUF008 Do not use mutable default values for dataclass attributes
src/boards/board.py:21:26: RUF008 Do not use mutable default values for dataclass attributes
src/boards/board.py:22:32: RUF008 Do not use mutable default values for dataclass attributes
src/boards/board.py:23:37: RUF008 Do not use mutable default values for dataclass attributes
$ cat target/ecosystem_all_results/*.stdout.txt | wc -l
115
```

scripts/ecosystem_all_check.py

@@ -0,0 +1,78 @@
+"""This is @konstin's scripts for checking an entire checkout of ~2.1k packages for
+panics, autofix errors and similar problems.
+
+It's a less elaborate, more hacky version of check_ecosystem.py
+"""
+
+import json
+import subprocess
+import sys
+from pathlib import Path
+from subprocess import CalledProcessError
+from typing import NamedTuple, Optional
+
+from tqdm import tqdm
+
+
+class Repository(NamedTuple):
+    """A GitHub repository at a specific ref."""
+
+    org: str
+    repo: str
+    ref: Optional[str]
+
+
+def main() -> None:
+    ruff_args = sys.argv[1:]
+    checkouts = Path("checkouts")
+    out_dir = Path("ecosystem_all_results")
+    github_search_json = Path("github_search.jsonl")
+    # Somehow it doesn't like plain ruff
+    ruff = Path.cwd().joinpath("ruff")
+
+    out_dir.mkdir(parents=True, exist_ok=True)
+
+    repositories = []
+    for line in github_search_json.read_text().splitlines():
+        item = json.loads(line)
+        # Pick only the easier case for now.
+        if item["path"] != "pyproject.toml":
+            continue
+        repositories.append(
+            Repository(
+                item["owner"],
+                item["repo"],
+                item.get("ref"),
+            ),
+        )
+
+    successes = 0
+    errors = 0
+    for repository in tqdm(repositories):
+        project_dir = checkouts.joinpath(repository.org).joinpath(repository.repo)
+        if not project_dir.is_dir():
+            tqdm.write(f"Missing {project_dir}")
+            errors += 1
+            continue
+
+        try:
+            output = subprocess.run(
+                [ruff, *ruff_args, "."],
+                cwd=project_dir,
+                capture_output=True,
+                text=True,
+            )
+        except CalledProcessError as e:
+            tqdm.write(f"Ruff failed on {project_dir}: {e}")
+            errors += 1
+            continue
+
+        org_repo = f"{repository.org}:{repository.repo}"
+        out_dir.joinpath(f"{org_repo}.stdout.txt").write_text(output.stdout)
+        out_dir.joinpath(f"{org_repo}.stderr.txt").write_text(output.stderr)
+        successes += 1
+    print(f"Success: {successes} Error {errors}")
+
+
+if __name__ == "__main__":
+    main()