Previously we just omitted diagnostic summaries when using `--fix` or
`--diff` with a stdin file. Now, we still write the summaries to stderr
instead of the main writer (which is generally stdout but could be
changed by `--output-file`).
Rebase of https://github.com/astral-sh/ruff/pull/5119 authored by
@evanrittenhouse with additional refinements.
## Changes
- Adds `--unsafe-fixes` / `--no-unsafe-fixes` flags to `ruff check`
- Violations with unsafe fixes are not shown as fixable unless opted-in
- Fix applicability is respected now
- `Applicability::Never` fixes are no longer applied
- `Applicability::Sometimes` fixes require opt-in
- `Applicability::Always` fixes are unchanged
- Hints for availability of `--unsafe-fixes` added to `ruff check`
output
## Examples
Check hints at hidden unsafe fixes
```
❯ ruff check example.py --no-cache --select F601,W292
example.py:1:14: F601 Dictionary key literal `'a'` repeated
example.py:2:15: W292 [*] No newline at end of file
Found 2 errors.
[*] 1 fixable with the `--fix` option (1 hidden fix can be enabled with the `--unsafe-fixes` option).
```
We could add an indicator for which violations have hidden fixes in the
future.
Check treats unsafe fixes as applicable with opt-in
```
❯ ruff check example.py --no-cache --select F601,W292 --unsafe-fixes
example.py:1:14: F601 [*] Dictionary key literal `'a'` repeated
example.py:2:15: W292 [*] No newline at end of file
Found 2 errors.
[*] 2 fixable with the --fix option.
```
Also can be enabled in the config file
```
❯ cat ruff.toml
unsafe-fixes = true
```
And opted-out per invocation
```
❯ ruff check example.py --no-cache --select F601,W292 --no-unsafe-fixes
example.py:1:14: F601 Dictionary key literal `'a'` repeated
example.py:2:15: W292 [*] No newline at end of file
Found 2 errors.
[*] 1 fixable with the `--fix` option (1 hidden fix can be enabled with the `--unsafe-fixes` option).
```
Diff does not include unsafe fixes
```
❯ ruff check example.py --no-cache --select F601,W292 --diff
--- example.py
+++ example.py
@@ -1,2 +1,2 @@
x = {'a': 1, 'a': 1}
-print(('foo'))
+print(('foo'))
\ No newline at end of file
Would fix 1 error.
```
Unless there is opt-in
```
❯ ruff check example.py --no-cache --select F601,W292 --diff --unsafe-fixes
--- example.py
+++ example.py
@@ -1,2 +1,2 @@
-x = {'a': 1}
-print(('foo'))
+x = {'a': 1, 'a': 1}
+print(('foo'))
\ No newline at end of file
Would fix 2 errors.
```
https://github.com/astral-sh/ruff/pull/7790 will improve the diff
messages following this pull request
Similarly, `--fix` and `--fix-only` require the `--unsafe-fixes` flag to
apply unsafe fixes.
## Related
Replaces #5119
Closes https://github.com/astral-sh/ruff/issues/4185
Closes https://github.com/astral-sh/ruff/issues/7214
Closes https://github.com/astral-sh/ruff/issues/4845
Closes https://github.com/astral-sh/ruff/issues/3863
Addresses https://github.com/astral-sh/ruff/issues/6835
Addresses https://github.com/astral-sh/ruff/issues/7019
Needs follow-up https://github.com/astral-sh/ruff/issues/6962
Needs follow-up https://github.com/astral-sh/ruff/issues/4845
Needs follow-up https://github.com/astral-sh/ruff/issues/7436
Needs follow-up https://github.com/astral-sh/ruff/issues/7025
Needs follow-up https://github.com/astral-sh/ruff/issues/6434
Follow-up #7790
Follow-up https://github.com/astral-sh/ruff/pull/7792
---------
Co-authored-by: Evan Rittenhouse <evanrittenhouse@gmail.com>
## Summary
This PR enables `ruff format` to format Jupyter notebooks.
Most of the work is contained in a new `format_source` method that
formats a generic `SourceKind`, then returns `Some(transformed)` if the
source required formatting, or `None` otherwise.
Closes https://github.com/astral-sh/ruff/issues/7598.
## Test Plan
Ran `cat foo.py | cargo run -p ruff_cli -- format --stdin-filename
Untitled.ipynb`; verified that the console showed a reasonable error:
```console
warning: Failed to read notebook Untitled.ipynb: Expected a Jupyter Notebook, which must be internally stored as JSON, but this file isn't valid JSON: EOF while parsing a value at line 1 column 0
```
Ran `cat Untitled.ipynb | cargo run -p ruff_cli -- format
--stdin-filename Untitled.ipynb`; verified that the JSON output
contained formatted source code.
## Summary
When writing back notebooks via `stdout`, we need to write back the
entire JSON content, not _just_ the fixed source code. Otherwise,
writing the output _back_ to the file will yield an invalid notebook.
Closes https://github.com/astral-sh/ruff/issues/7747
## Test Plan
`cargo test`
## Summary
This PR adds a new `lint` section to the configuration that groups all linter-specific settings. The existing top-level configurations continue to work without any warning because the `lint.*` settings are experimental.
The configuration merges the top level and `lint.*` settings where the settings in `lint` have higher precedence (override the top-level settings). The reasoning behind this is that the settings in `lint.` are more specific and more specific settings should override less specific settings.
I decided against showing the new `lint.*` options on our website because it would make the page extremely long (it's technically easy to do, just attribute `lint` with `[option_group`]). We may want to explore adding an `alias` field to the `option` attribute and show the alias on the website along with its regular name.
## Test Plan
* I added new integration tests
* I verified that the generated `options.md` is identical
* Verified the default settings in the playground

## Summary
I noticed that we have a custom parser for rule selectors, but it wasn't
actually being used? This PR adds it back to our Clap setup and changes
the parser to only show full categories and individual rules when
tab-completing:
<img width="1792" alt="Screen Shot 2023-09-13 at 9 13 38 PM"
src="028b18d2-8c92-49c1-b781-f24c9ae310f7">
<img width="1792" alt="Screen Shot 2023-09-13 at 9 13 40 PM"
src="fd598da5-78fb-412d-a69e-2a0963d479cd">
<img width="1792" alt="Screen Shot 2023-09-13 at 9 13 58 PM"
src="7c482b90-6e54-425c-ae23-fb50496a177a">
The previous implementation showed all codes, which I found too noisy:
<img width="1792" alt="Screen Shot 2023-09-13 at 8 57 09 PM"
src="db370a0e-2a9f-4acd-b1e3-224a1f8e9ce5">
The rule selector is not useful because `--select PREVIEW` only targets
Ruff developers and `--ignore PREVIEW` has no effect due to its low
specificity. We may restore it later if useful.
## Summary
Adds warnings for cases where:
- A selector does not include any rules because preview is disabled
- A nursery rule is selected without the preview flag
## Test plan
Add integration tests
## Summary
When running Ruff from stdin, we were always falling back to the default
source type, even if the user specified a path (as is the case when
running from the LSP). This PR wires up the source type inference, which
means we now get the expected result when checking `.pyi` and `.ipynb`
files.
Closes#6627.
## Test Plan
Verified that `cat
crates/ruff/resources/test/fixtures/jupyter/valid.ipynb | cargo run -p
ruff_cli -- --force-exclude --no-cache --no-fix --isolated --select ALL
--stdin-filename foo.ipynb -` yielded the expected results (and differs
from the errors you get if you omit the filename).
Verified that `cat foo.pyi | cargo run -p ruff_cli -- --force-exclude
--no-cache --no-fix --format json --isolated --select TCH
--stdin-filename path/to/foo.pyi -` yielded no errors.
## Summary
It can happen that we can't read a file (a python file, a jupyter
notebook or pyproject.toml), which needs to be handled and handled
consistently for all file types. Instead of using `Err` or `error!`, we
emit E602 with the io error as message and continue. This PR makes sure
we handle all three cases consistently, emit E602.
I'm not convinced that it should be possible to disable io errors, but
we now handle the regular case consistently and at least print warning
consistently.
I went with `warn!` but i can change them all to `error!`, too.
It also checks the error case when a pyproject.toml is not readable. The
error message is not very helpful, but it's now a bit clearer that
actually ruff itself failed instead vs this being a diagnostic.
## Examples
This is how an Err of `run` looks now:

With an unreadable file and `IOError` disabled:

(we lint zero files but count files before linting not during so we exit
0)
I'm not sure if it should (or if we should take a different path with
manual ExitStatus), but this currently also triggers when `files` is
empty:

## Test Plan
Unix only: Create a temporary directory with files with permissions
`000` (not readable by the owner) and run on that directory. Since this
breaks the assumptions of most of the test code (single file, `ruff`
instead of `ruff_cli`), the test code is rather cumbersome and looks a
bit misplaced; i'm happy about suggestions to fit it in closer with the
other tests or streamline it in other ways. I added another test for
when the entire directory is not readable.
## Summary
I want to include URLs to the rule documentation in the LSP (the LSP has
a native `code_description` field for this, which, if specified, causes
the source to be rendered as a link to the docs). This PR exposes the
URL to the documentation in the Ruff JSON output.
## Summary
Maintain consistency while deserializing Jupyter notebook to JSON. The
following changes were made:
1. Use string array to store the source value as that's the default
(5781720423/nbformat/v4/nbjson.py (L56-L57))
2. Remove unused structs and enums
3. Reorder the keys in alphabetical order as that's the default.
(5781720423/nbformat/v4/nbjson.py (L51))
### Side effect
Removing the `preserve_order` feature means that the order of keys in
JSON output (`--format json`) will be in alphabetical order. This is
because the value is represented using `serde_json::Value` which
internally is a `BTreeMap`, thus sorting it as per the string key. For
posterity if this turns out to be not ideal, then we could define a
struct representing the JSON object and the order of struct fields will
determine the order in the JSON string.
## Test Plan
Add a test case to assert the raw JSON string.
I noticed in the byte-offsets refactor that the `JsonEmitter` uses one indexed column numbers for the diagnostic start and end locations but not for `edits`.
This PR changes the `JsonEmitter` to emit one-indexed column numbers for edits, as we already do for `Message::location` and `Message::end_location`.
## Open questions
~We'll need to change the LSP to subtract 1 from the columns in `_parse_fix`~
6e44fadf8a/ruff_lsp/server.py (L129-L150)
~@charliermarsh is there a way to get the ruff version in that method? If not, then I recommend adding a `version` that we increment whenever we make incompatible changes to the serialized message. We can then use it in the LSP to correctly compute the column offset.~
I'll use the presence of the `Fix::applicability` field to detect if the Ruff version uses one or zero-based column indices.
See https://github.com/charliermarsh/ruff-lsp/pull/103
In ruff-lsp (https://github.com/charliermarsh/ruff-lsp/pull/76) we want to add a "Disable \<rule\> for this line" quickfix. However, finding the correct line into which the `noqa` comment should be inserted is non-trivial (multi-line strings for example).
Ruff already has this info, so expose it in the JSON output for use by ruff-lsp.