`linkedProjects` is owned by the user's configuration, so when users
update this setting, `linkedProjects` is reset. This is problematic when
`linkedProjects` also contains projects discovered with `discoverCommand`.
The buggy behaviour occurred when:
(1) The user configures `discoverCommand` and loads a Rust project.
(2) The user changes any setting in VS Code, so rust-analyzer receives
`workspace/didChangeConfiguration`.
(3) `handle_did_change_configuration` ultimately calls
`Client::apply_change_with_sink()`, which updates `config.user_config`
and discards any items we added in `linkedProjects`.
Instead, separate out `discovered_projects_from_filesystem` and
`discovered_projects_from_command` from user configuration, so user
settings cannot affect any type of discovered project.
This fixes the subtle issue mentioned here:
https://github.com/rust-lang/rust-analyzer/pull/17246#issuecomment-2185259122
Partially fixes#15656 . When a crate graph is extended which is the case when new workspaces are added to the project
the rules for deduplication were too strict. One problem that arises from this is that in certain conditions
when we see the same crate having different `CrateOrigin`s the first form would be maintained. This approach however
results in some unwanted results such as making renaming forbidden as this has been recently only made available for
local crates. The given example in #15656 can still not be resolved with this PR as that involves taking inconsistencies
between dependencies into consideration. This will be addressed in a future PR.
This makes code more readale and concise,
moving all format arguments like `format!("{}", foo)`
into the more compact `format!("{foo}")` form.
The change was automatically created with, so there are far less change
of an accidental typo.
```
cargo clippy --fix -- -A clippy::all -W clippy::uninlined_format_args
```
