Docs: Fix Sphinx warnings in logging.rst (GH-108139)

Co-authored-by: Adam Turner <9087854+aa-turner@users.noreply.github.com>

Doc/library/logging.rst

@@ -439,7 +439,7 @@ Handler Objects
 
 Handlers have the following attributes and methods. Note that :class:`Handler`
 is never instantiated directly; this class acts as a base for more useful
-subclasses. However, the :meth:`__init__` method in subclasses needs to call
+subclasses. However, the :meth:`!__init__` method in subclasses needs to call
 :meth:`Handler.__init__`.
 
 .. class:: Handler
@@ -1019,29 +1019,33 @@ information into logging calls. For a usage example, see the section on
       'extra'. The return value is a (*msg*, *kwargs*) tuple which has the
       (possibly modified) versions of the arguments passed in.
 
-In addition to the above, :class:`LoggerAdapter` supports the following
+   In addition to the above, :class:`LoggerAdapter` supports the following
-methods of :class:`Logger`: :meth:`~Logger.debug`, :meth:`~Logger.info`,
+   methods of :class:`Logger`: :meth:`~Logger.debug`, :meth:`~Logger.info`,
-:meth:`~Logger.warning`, :meth:`~Logger.error`, :meth:`~Logger.exception`,
+   :meth:`~Logger.warning`, :meth:`~Logger.error`, :meth:`~Logger.exception`,
-:meth:`~Logger.critical`, :meth:`~Logger.log`, :meth:`~Logger.isEnabledFor`,
+   :meth:`~Logger.critical`, :meth:`~Logger.log`, :meth:`~Logger.isEnabledFor`,
-:meth:`~Logger.getEffectiveLevel`, :meth:`~Logger.setLevel` and
+   :meth:`~Logger.getEffectiveLevel`, :meth:`~Logger.setLevel` and
-:meth:`~Logger.hasHandlers`. These methods have the same signatures as their
+   :meth:`~Logger.hasHandlers`. These methods have the same signatures as their
-counterparts in :class:`Logger`, so you can use the two types of instances
+   counterparts in :class:`Logger`, so you can use the two types of instances
-interchangeably.
+   interchangeably.
+
+   .. versionchanged:: 3.2
 
-.. versionchanged:: 3.2
       The :meth:`~Logger.isEnabledFor`, :meth:`~Logger.getEffectiveLevel`,
       :meth:`~Logger.setLevel` and :meth:`~Logger.hasHandlers` methods were added
       to :class:`LoggerAdapter`.  These methods delegate to the underlying logger.
 
-.. versionchanged:: 3.6
+   .. versionchanged:: 3.6
-   Attribute :attr:`manager` and method :meth:`_log` were added, which
+
+      Attribute :attr:`!manager` and method :meth:`!_log` were added, which
       delegate to the underlying logger and allow adapters to be nested.
 
-.. versionchanged:: 3.13
+   .. versionchanged:: 3.13
-   Remove the undocumented ``warn()`` method which was an alias to the
+
-   ``warning()`` method.
+      Remove the undocumented :meth:`!warn`` method which was an alias to the
+      :meth:`!warning` method.
+
+   .. versionchanged:: 3.13
 
-.. versionchanged:: 3.13
       The *merge_extra* argument was added.
 
 
@@ -1430,8 +1434,8 @@ functions.
 .. function:: setLoggerClass(klass)
 
    Tells the logging system to use the class *klass* when instantiating a logger.
-   The class should define :meth:`__init__` such that only a name argument is
+   The class should define :meth:`!__init__` such that only a name argument is
-   required, and the :meth:`__init__` should call :meth:`Logger.__init__`. This
+   required, and the :meth:`!__init__` should call :meth:`!Logger.__init__`. This
    function is typically called before any loggers are instantiated by applications
    which need to use custom logger behavior. After this call, as at any other
    time, do not instantiate loggers directly using the subclass: continue to use

Doc/tools/.nitignore

@@ -92,7 +92,6 @@ Doc/library/inspect.rst
 Doc/library/locale.rst
 Doc/library/logging.config.rst
 Doc/library/logging.handlers.rst
-Doc/library/logging.rst
 Doc/library/lzma.rst
 Doc/library/mailbox.rst
 Doc/library/mmap.rst