diff --git a/packages/opencode/src/snapshot/index.ts b/packages/opencode/src/snapshot/index.ts
index e4fed2d68..2f8661f5e 100644
--- a/packages/opencode/src/snapshot/index.ts
+++ b/packages/opencode/src/snapshot/index.ts
@@ -10,7 +10,19 @@ import { Instance } from "../project/instance"
 export namespace Snapshot {
   const log = Log.create({ service: "snapshot" })
 
-  export function init() {}
+  export function init() {
+    Array.fromAsync(
+      new Bun.Glob("**/snapshot").scan({
+        absolute: true,
+        onlyFiles: false,
+        cwd: Global.Path.data,
+      }),
+    ).then((files) => {
+      for (const file of files) {
+        fs.rmdir(file, { recursive: true })
+      }
+    })
+  }
 
   export async function track() {
     if (Instance.project.vcs !== "git") return
@@ -101,7 +113,8 @@ export namespace Snapshot {
             log.info("file existed in snapshot but checkout failed, keeping", { file })
           } else {
             log.info("file did not exist in snapshot, deleting", { file })
-            await fs.unlink(file).catch(() => {})
+            const absolutePath = path.join(Instance.worktree, file)
+            await fs.unlink(absolutePath).catch(() => {})
           }
         }
         files.add(file)
diff --git a/packages/opencode/test/snapshot/snapshot.test.ts b/packages/opencode/test/snapshot/snapshot.test.ts
index ca74389b6..5849a2675 100644
--- a/packages/opencode/test/snapshot/snapshot.test.ts
+++ b/packages/opencode/test/snapshot/snapshot.test.ts
@@ -549,7 +549,7 @@ test("revert should not delete files that existed but were deleted in snapshot",
       await Bun.write(`${tmp.path}/a.txt`, "recreated content")
 
       const patch = await Snapshot.patch(snapshot2!)
-      expect(patch.files).toContain(`${tmp.path}/a.txt`)
+      expect(patch.files).toContain(`a.txt`)
 
       await Snapshot.revert([patch])
 
@@ -573,8 +573,8 @@ test("revert preserves file that existed in snapshot when deleted then recreated
       await Bun.write(`${tmp.path}/newfile.txt`, "new")
 
       const patch = await Snapshot.patch(snapshot!)
-      expect(patch.files).toContain(`${tmp.path}/existing.txt`)
-      expect(patch.files).toContain(`${tmp.path}/newfile.txt`)
+      expect(patch.files).toContain(`existing.txt`)
+      expect(patch.files).toContain(`newfile.txt`)
 
       await Snapshot.revert([patch])